FastQCFastQC Report
Thu 6 Oct 2022
EGAF00006436284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006436284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43284516
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1670460.3859255351266952No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG825250.19065709317391927No Hit
GTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTC464460.1073039606126126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)