FastQCFastQC Report
Thu 6 Oct 2022
EGAF00006436566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006436566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87856927
Sequences flagged as poor quality0
Sequence length50
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA2026550.2306647943650476No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG925660.10535993365668253No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT885780.10082073551240872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)