FastQCFastQC Report
Wed 10 Jul 2024
EGAF00006465116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006465116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54672045
Total Bases8 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCGT1441720.2637033240662573No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1389400.2541335338745789No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG1361180.24897184658082572No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG1178990.2156476861255144No Hit
GATCAATCGCCCCCGGGGGTGCCTCCGGGCTCCTCGGGGTGCGCGGCTGG1022070.18694563190383678No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA1020440.1866474905045165No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA855970.1565644745866009No Hit
GGTCCGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACCG780540.14276766124259666No Hit
CCGGGCTCCTCGGGGTGCGCGGCTGGGGGTTCCCTCGCAGGGCCCGCCGG716580.13106881222387054No Hit
GGGTCCGAGCCGCGACGGGCGAGGGGCGGACGTTCGTGGCGAACGGGACC663350.12133257499330782No Hit
GTGACGTCGTGCTCTCCCGGGCCGGGTCCGAGCCGCGACGGGCGAGGGGC662250.12113137527597513No Hit
GGTGACGTCGTGCTCTCCCGGGCCGGGTCCGAGCCGCGACGGGCGAGGGG569610.10418670089988402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)