FastQCFastQC Report
Wed 10 Jul 2024
EGAF00006465132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006465132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42699384
Total Bases6.1 Gbp
Sequences flagged as poor quality0
Sequence length35-150
%GC25

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN968510.22682060237683993No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)