FastQCFastQC Report
Tue 14 May 2024
EGAF00006473876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006473876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108390845
Total Bases8.1 Gbp
Sequences flagged as poor quality0
Sequence length43-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1716280.1583417861536184No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1331880.1228775363823393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)