FastQCFastQC Report
Tue 14 May 2024
EGAF00006473877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006473877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108390845
Total Bases8.1 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2842320.2622287887874663No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1360210.12549122575804256No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1140970.10526442523812782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)