FastQCFastQC Report
Thu 16 May 2024
EGAF00006473897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006473897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142064990
Total Bases10.7 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2485860.1749804790047147No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1820450.12814205667420242No Hit
ACTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTAT1529990.10769648454555904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)