FastQCFastQC Report
Thu 16 May 2024
EGAF00006473901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006473901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118614496
Total Bases8.9 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2065570.17414144726459066No Hit
CTTTGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAA1763590.14868250167331992No Hit
TGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCA1399040.11794848413806017No Hit
GACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTA1198360.1010298100495238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)