FastQCFastQC Report
Thu 28 Jul 2022
EGAF00006481076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006481076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32473653
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGAGGACTATCTCGTAT603180.1857444248726806TruSeq Adapter, Index 3 (97% over 38bp)
GCCCAGGTTAAGGGCCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGC358240.11031712385422114No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)