FastQCFastQC Report
Thu 25 Aug 2022
EGAF00006598510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences320002599
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT9409422229.404205557717987No Hit
ATGAAGAC8142372225.44470646627467No Hit
GATTCTGG7215731522.54897779752095No Hit
CCACTACA6940883221.690083835850345No Hit
TGCGGCTA5384400.16826113340410714No Hit
GATTCTGA4521570.14129791489599747RNA PCR Primer, Index 40 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)