FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38844980
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG1168559430.082636160451102No Hit
CGTGCAGA1145841629.49780383462677No Hit
GTATGCTC838453021.58459085318103No Hit
AACAAGAT668589817.21174267563016No Hit
AACCAGAT2021430.5203838436781277No Hit
TCGCTTCA501870.12919816151276176No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)