FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39069914
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG1174321430.056923084089714No Hit
CGTGCAGA1152830229.506852766555873No Hit
GTATGCTC843198221.5817777331171No Hit
AACAAGAT675500417.289528715113118No Hit
AACCAGAT1786730.45731608213931574No Hit
TCGCTTCA501280.1283033282335866No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)