FastQCFastQC Report
Sat 27 Aug 2022
EGAF00006598521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390871876
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTGAT12475507631.917127749554435No Hit
GAGCAAGA11619175729.726302692598942No Hit
ATATCCCG11534978729.510894511121084No Hit
CGCAGTTC310404617.9413390693783255No Hit
ATATCCCA5573920.14260222702745695No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)