FastQCFastQC Report
Fri 26 Aug 2022
EGAF00006598524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388421820
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTGAT12395479531.912418051076536No Hit
GAGCAAGA11548459629.731747819934522No Hit
ATATCCCG11454498729.489843541745415No Hit
CGCAGTTC308515087.942784470759134No Hit
ATATCCCA5533230.14245414946050147No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)