FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42723403
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGCCTT1444848933.818675445867456No Hit
TCTCGGGC1117719826.161768995789032No Hit
AGGATACA929836721.76410666537963No Hit
GTATATAG708809016.59064939185673No Hit
CACGCCTA2084480.4879012095548662No Hit
AGGATAAA502920.11771534210418585No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)