FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47963560
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTCG1395792529.10110300403056No Hit
AATCTCTC1338492527.906446060300777No Hit
CGGAGGGA1121023723.37240396667804No Hit
TCAGAAAT853919317.803501241359065No Hit
CATCTCTC1428660.2978636281376945No Hit
GTCTCTCA972070.20266844245923366No Hit
ACTCTCTC750260.15642291773171133No Hit
AATCTCTA566860.11818555586782967No Hit
CGGAGGAA545200.11366962752556316No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)