FastQCFastQC Report
Thu 25 Aug 2022
EGAF00006598547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences289780561
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT9147172331.56585889831306No Hit
CCAGGGCA8520296729.402581976504628No Hit
AATAATGG7429009725.636673744999754No Hit
GTGTCATC3648655712.591098890170208No Hit
AATAATGA4886270.16861966113731142No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)