FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40835167
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACACT1252267930.666408196640898No Hit
CCTTTGTC1022239225.033305239084736No Hit
GTACGCGG996950124.414008151356402No Hit
TAGGATAA766655618.77439609834337No Hit
AGCACACA555060.13592695727190243No Hit
GTACGCGA473280.11590010149829925No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)