FastQCFastQC Report
Fri 26 Aug 2022
EGAF00006598559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466511238
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACGCC17338482837.16627036538828No Hit
AGCCAATT15467571533.15583900253224No Hit
CTAGGTGA13267228728.43924780221479RNA PCR Primer, Index 38 (100% over 8bp)
TCGTTCAG16724180.3584946864666956No Hit
AGCCAATA8743450.18742206591816338No Hit
GATACGCA7860190.16848875996423476No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)