FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44404727
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC1676371037.75208436705398No Hit
TTAGCTCG1004388522.61895450905486No Hit
ACTTAGGA854404719.24130059396604No Hit
GACCTATT844997519.029449274623396No Hit
GACCTATA900890.202881553578744No Hit
GTAGCTCG618440.13927346068358892No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)