FastQCFastQC Report
Fri 26 Aug 2022
EGAF00006598568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences311003861
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATTCC10844953934.87080149143229No Hit
AGTTGCAG7298958623.469028894146106No Hit
TTGCCGGA7141665222.963268613568754No Hit
CAAGAATT5539451417.81151970971833No Hit
GCCATTCA4156820.13365814773598583No Hit
TTGCCGAA3411060.10967902420992773No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)