FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33885206
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGGCT1075031131.725676981276134No Hit
TCTGTTGG911767526.907538941920556No Hit
AGAAACTC715281621.10896418926891No Hit
GACTCAAA639528418.873380908470793No Hit
TCTGTTGA745680.2200606364913349No Hit
CTGCGGCA501270.14793181425546004No Hit
AGAAACTA378450.11168590800362849No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)