FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34046657
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGGCT1079781631.714761305346368No Hit
TCTGTTGG916291826.912827300489443No Hit
AGAAACTC718183121.09408568365464No Hit
GACTCAAA642658518.87581796944117No Hit
TCTGTTGA742650.21812714240931202No Hit
CTGCGGCA499170.1466135133326012No Hit
AGAAACTA377710.11093893888025483No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)