FastQCFastQC Report
Fri 26 Aug 2022
EGAF00006598595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences325070247
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGTCGC10500946532.30362236135379No Hit
CCCAATAG9186839528.261089979114573No Hit
TATCGATA7865205924.19540383220615No Hit
GTGTCGCT4576990714.080004990429037No Hit
CCCACTAG10330610.317796233132342No Hit
CCCAATAA4252950.13083172142789187No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)