FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32250238
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTCGG863371126.77099933340027No Hit
TGCGAACT847316926.273198355931516No Hit
ATTACTTC739957022.944233775887174No Hit
CAGCGGAA732251022.70528980282254No Hit
GCATTCGA608970.18882651346635024No Hit
ATTACTTA590750.18317694275620539No Hit
CAGCGAAA454290.14086407672402293No Hit
TGCGAACA348780.10814803909354095No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)