FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32439235
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTCGG867714426.74891685947588No Hit
TGCGAACT852511026.2802436617263No Hit
ATTACTTC743940722.933361406334026No Hit
CAGCGGAA736569722.70613656579756No Hit
GCATTCGA610830.18829975491098971No Hit
ATTACTTA586390.18076566848755835No Hit
CAGCGAAA454610.14014202246138047No Hit
TGCGAACA351590.1083841835357708No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)