FastQCFastQC Report
Thu 25 Aug 2022
EGAF00006598603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419716540
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTATGT12462878929.693561516541617No Hit
TTGAGATC10550953625.138284042844727No Hit
AAACCGAG9383148822.35591859210504No Hit
GCTGTCCA8962712621.354203958700317No Hit
AACCCGAG22409520.5339203453835771No Hit
GTGAGATC6978670.16627102663144988No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)