FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34909147
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCCCGT1076577030.839395760658373No Hit
TCAGGGTG848526124.306698184289637No Hit
AGCTATCA799366422.898479874057077No Hit
CATATAAC730859620.936048652234327No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)