FastQCFastQC Report
Fri 26 Aug 2022
EGAF00006598615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403334150
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTCAC12340192130.59545565382946No Hit
TGGTGTTT10308168425.557390565614146No Hit
GATCAGCA9884837124.50781095525881No Hit
ACAACAGG7379075618.29519171634735No Hit
TGGTGTTA12599620.31238664020886897No Hit
ACAACAGA4166910.10331160899715533No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)