FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33299540
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT919656727.617699824081654No Hit
CTGGACTC909253227.30527809092858No Hit
AAACCTCA797870523.960406059663285No Hit
TGTAGAAG658105319.76319492701701No Hit
CTGGACTA410150.12316986961381447No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)