FastQCFastQC Report
Wed 24 Aug 2022
EGAF00006598636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37769483
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCCA1098237629.077379745971104No Hit
ACAGAGGT1012163526.798447307314216No Hit
GTCCTAAC962893125.493944410094254No Hit
TATAGTTG654453417.327571044591743No Hit
CGGTCCAA686400.18173402055834334No Hit
GATAGTTG391140.1035597972045315No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)