FastQCFastQC Report
Fri 26 Aug 2022
EGAF00006598642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences336624804
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT11238817033.38677621628857No Hit
AAGGGTGA8080346724.004014570477107No Hit
CGTTAATC7644032222.707869738559136No Hit
TTACTCAG6432191619.107895566721222No Hit
CGTTAATA4303750.12785005587407633No Hit
GCCACGCA4239060.12592833176963394No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)