FastQCFastQC Report
Tue 23 Aug 2022
EGAF00006598645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23684541
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG664014028.03575547442528No Hit
GCATCTCC632325526.697815254262263No Hit
AACGTCAA597968525.24720660619938No Hit
TGTAAGGT435492418.38720032615367No Hit
GCATCTCA692500.29238480914618525No Hit
CTGCGATA552260.2331731909011874No Hit
AACCTCAA405600.17125094381183067No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)