FastQCFastQC Report
Fri 26 Aug 2022
EGAF00006598651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences318063401
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT9357947529.421641944902678No Hit
ATGAAGAC8090694325.43736335134013No Hit
GATTCTGG7167182122.533815828750445No Hit
CCACTACA6896219721.68190265940092No Hit
TGCGGCTA5320510.1672782842437128No Hit
GATTCTGA4481380.14089580838004054RNA PCR Primer, Index 40 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)