FastQCFastQC Report
Wed 14 Sep 2022
EGAF00006598934

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006598934
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68260103
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2690650.3941760826232565No Hit
GGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGT1059310.1551872841445903No Hit
GGGAGGGCGATGAGGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGT971820.142370133839382No Hit
GTCGGAGGAAAAGGTTGGGGAACAGCTAAATAGGTTGTTGTTGATTTGGTTAAAAAATAGTAGAGGGATGATGCT919140.13465259494261236No Hit
GGGCAGGATAGTTCAGACGGTTTCTATTTCCTGAGCGTCTGAGATGTTAG878520.1287018274789301No Hit
GTGGTGATTAGTCGGTTGTTGATGAGATATTTGGAGGTGGGGATCAATAG743480.10891867537908637No Hit
CCCGGATTTGTTCACTGGGTCTTTGTCTTTCTTGGCCGACTTTCCAGCGT739180.10828873199912985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)