FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11493135
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACA2584142.2484204701328228No Hit
CCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACA2374702.0661899473033247No Hit
CCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTC1946061.6932368757523513No Hit
CCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACAC1927371.6769749942030614No Hit
GGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAA1916241.667290952381574No Hit
CTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTT1587731.3814594538391831No Hit
GGAAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGG1303391.134059592965714No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1187601.0333124948066823No Hit
CCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCT847610.7374924248257764No Hit
GGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAAG837290.7285131515465537No Hit
GGCCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACAC797010.6934661430497423No Hit
GTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACAAGC698480.607736705433287No Hit
CCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTT693670.6035515984107035No Hit
GGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAAGA547440.47631912441644514No Hit
CCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTC396550.3450320560926153No Hit
TTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTT360360.31354369369193No Hit
GAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAAGAA352890.3070441615799344No Hit
CGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACAAG300860.26177365879718634No Hit
AGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGA286140.24896601318961276No Hit
AGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAAGAAAA272060.2367152217388902No Hit
CCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTT255250.22208909927535No Hit
GCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCT241070.2097512993626195No Hit
CCCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACA226030.19666522667662042No Hit
CCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACAA224480.19531659551549688No Hit
CCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACAAGCAGT217910.18960013956157304No Hit
AAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGG217130.18892147355791086No Hit
GTGGGTTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTC209220.18203910421308026No Hit
CTTCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCC205080.17843695388595018No Hit
CCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACAAGCAG199770.17381680455332685No Hit
CTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCTT199440.17352967662870053No Hit
CTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTC196400.17088461938365815No Hit
AAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAAGAAA195670.17024945761099994No Hit
CCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCT193310.1681960579076118No Hit
GGGAAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAG190350.1656206074321758No Hit
CCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCT178370.1551969936836207No Hit
TTCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCC169480.14746194141111194No Hit
GGGCCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACA168390.14651354917522505No Hit
CTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACAAGCAGTT160070.13927444513616172No Hit
TGAAAAGAAGGGGAAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGG149000.12964260839187913No Hit
GTTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTG147090.12798074676752688No Hit
CTCCGCCTCTTGGGTTTGCGTGACGGTTCCACATCACCGACCCTCCGCCT145550.12664081645260408No Hit
GAGAAATTGAAAAGAAGGGGAAGGGGAAGAAAAGAAGGGGAAGAAGATCA142920.12435249390179441No Hit
TCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCT141330.12296905935586765No Hit
GAAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGG137700.11981065218497826No Hit
CTCCGCCTCTTGGGTTTGCGTGACGGTTCCACGTCACCGACCCTCCGCCT135280.11770504740438532No Hit
CTCCCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCC122420.10651575919016004No Hit
ATTGAAAAGAAGGGGAAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAA121470.10568917880108429No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)