FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36724597
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA1225490.33369733097411525No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC936120.2549027290891715No Hit
ATCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC699010.19033837185469998No Hit
ATCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT676530.18421713381905866No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG628990.17127213131841856No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC487650.13278566406052053No Hit
ATGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC415670.11318572127557995No Hit
ATCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG389290.10600252468393322No Hit
ATTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG379020.10320603381978569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)