FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19764053
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA1685000.852557924227384No Hit
ATCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG508160.2571132550595771No Hit
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA331410.16768321760723875No Hit
ATCTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACG319480.16164700630988998No Hit
ATCAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC309900.15679982238460907No Hit
ATCTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCT292680.14808703457737135No Hit
ATAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAG266430.13480534584682607No Hit
ATGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCC234060.11842712625795934No Hit
ATGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA209740.10612195787979319No Hit
ATACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGAC199820.1011027444623833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)