FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52017294
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA791850.15222821856131155No Hit
TATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC747380.1436791387110602No Hit
TAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG621780.11953332289834223No Hit
TACTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA618380.1188796941263419No Hit
TACAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG546020.10496893590812317No Hit
TACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC521200.10019744587252079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)