FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6307019
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGA188710.2992063286950618No Hit
TTCGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC173980.2758513966740864No Hit
TTCGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA142290.22560578935944225No Hit
TTCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT133280.21132011810968068No Hit
TTCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACC122010.19345113753422974No Hit
TTCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGG117170.18577714765089498No Hit
TTCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA114360.1813217940202812No Hit
TTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGT106810.16935100401631897No Hit
TTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGA105350.16703612277051966No Hit
TTTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC93710.14858049420811956No Hit
TTGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGA90180.14298355530560475No Hit
TTCGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAA83380.13220191662653943No Hit
TTGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG78940.1251621407831497No Hit
TTCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA78520.12449621604120743No Hit
TTGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGA75190.11921638415866513No Hit
TTCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGG72430.1148403072830445No Hit
TTAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAAT71020.1126047027922383No Hit
TTGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG66230.1050099896638967No Hit
TTCCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGC64890.10288537263008087No Hit
TTGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG64860.10283780657708498No Hit
TTCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGC64350.10202918367615509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)