FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33253585
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA13471284.051075996768469No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC2792850.8398643334245014No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG2786270.83788559940229No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2629950.7908771339992364No Hit
CTCAGACCGCGTTCTCTGCCTCTCACTCCCCAATACGGAGAGAAGAACGA2364960.7111894852840679No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAA1526380.4590121636509266No Hit
CGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCG1175890.35361300142525987No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA1112800.33464061092961855No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1070470.321911156346No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC999890.3006863771229478No Hit
GGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACG920840.27691450410534685No Hit
AGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAA877430.26386027250896404No Hit
CATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTT637440.1916906102003739No Hit
CTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCACGCTCAG541780.16292378701424223No Hit
ACTCAGACCGCGTTCTCTGCCTCTCACTCCCCAATACGGAGAGAAGAACG460820.13857753983517868No Hit
CGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGG457890.13769643182832766No Hit
CACTCAGACCGCGTTCTCTGCCTCTCACTCCCCAATACGGAGAGAAGAAC446930.1344005465876837No Hit
CAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATC429060.12902668990426144No Hit
GCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCACGCTCA423060.12722237316668264No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA388590.11685657350929231No Hit
ATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGC380490.1144207459135609No Hit
ATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTC333850.1003951904734482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)