FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33253585
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC3699851.1126168802551664No Hit
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA3456421.039412743017031No Hit
ATCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC2473360.7437874743429919No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG2210950.6648756818249821No Hit
ATCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA2149140.6462882122333578No Hit
ATGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1789310.5380803302861932No Hit
ATCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG1552120.4667526824551398No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC1540150.46315307056367No Hit
ATGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA1511700.45459760203298377No Hit
ATTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1263370.3799199394591591No Hit
ATCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTT1177200.35400694391296456No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG1153580.3469039503560293No Hit
ATCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT1108770.3334287115208781No Hit
ATGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGG931730.28018933898405235No Hit
ATATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAG924540.27802716609352046No Hit
ATGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG882460.26537289137396763No Hit
ATGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA858870.25827891940072023No Hit
ATGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGA797810.23991698940129313No Hit
ATTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG778670.2341612190084167No Hit
ATAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTG741950.2231188005744343No Hit
ATCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGGCTTTT719360.21632554805745005No Hit
ATCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTT710010.21351382114138973No Hit
ATCTACAATATAGCTGCTAAGTGCTGTGTTGTCGTTCCCCCTGCTTAAAA691180.20785127377995488No Hit
ATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA661070.19879661095187182No Hit
ATAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCG627990.18884881133868725No Hit
ATGTAGCGTTTTCTCCTGAGCGTGAAGCCGGCTTTTTGGCGTTGCTTCGC547120.16452962891068737No Hit
ATAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAG546240.1642649957891758No Hit
ATCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCC544100.1636214561527727No Hit
ATCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGAGCA491890.1479208933412743No Hit
ATTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGA487830.146699972348846No Hit
ATTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAAC486280.14623385719163814No Hit
ATCAGGGATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG460220.13839710816142078No Hit
ATCACCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGA450890.13559139563448572No Hit
ATTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTC439090.13204290605058072No Hit
ATCGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGGCTTTTTG424210.12756820054138523No Hit
ATGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGA419580.1261758694588869No Hit
ATGGGATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA403200.12125008476529674No Hit
ATTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGC398930.11996601268705315No Hit
ATCCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGC378190.11372909116415568No Hit
ATCGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC365750.10998814112824226No Hit
ATGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGGCTTTTTGGCG354720.10667120552565985No Hit
ATCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAA352420.10597955077625465No Hit
ATCCGGCTTTTTGGCGTTGCTTCGCTGCAACTGCCGTCAGCCATTGATGA343080.10317083105475695No Hit
ATATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAG342920.10312271594175486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)