FastQCFastQC Report
Thu 29 Sep 2022
EGAF00006609487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38150367
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA801300.210037297937396No Hit
ATCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT780130.204488203219644No Hit
ATCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA669830.1755762926212479No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC656990.17221066313726419No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGATAAACCACGAGGAAGAGAGGTA561900.14728560802573668No Hit
ATCACCGATAAACCACGAGGAAGAGAGGTACCGTTTTCTCCTGAGCGTGA541640.14197504312343837No Hit
ATCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG503370.13194368484056787No Hit
ATCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC501930.13156623106666313No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG440300.11541173378489386No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC430690.11289275408543252No Hit
ATCGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC399680.10476439191266496No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)