FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24866164
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA963640.3875306219326793No Hit
ATCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA858450.3452281582314023No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG506790.2038070689150124No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC425580.17114823178999383No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG315390.12683500358157374No Hit
ATGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA307160.12352528520281617No Hit
ATTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG294030.11824501760705833No Hit
ATCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA285440.11479052418378645No Hit
ATGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA261430.10513483302048518No Hit
ATCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG250810.1008639692073132No Hit
ATGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG249400.10029693361629884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)