FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39403001
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA1483300.37644340846018304No Hit
TTTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC821560.20850188542745765No Hit
TTATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC556920.1413394883298356No Hit
TTGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA528090.13402278674154794No Hit
TTCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC479720.12174707200601294No Hit
TTGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA475350.120638019423952No Hit
TTGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG471630.11969392889643102No Hit
TTGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG417040.10583965419283672No Hit
TTTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAAC414700.10524579079649289No Hit
TTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG406000.1030378371434196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)