FastQCFastQC Report
Wed 1 May 2024
EGAF00006609531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23015601
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA1158020.5031456706257639No Hit
GACATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA826760.359217210969203No Hit
GATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC444610.1931776624038625No Hit
GACCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG418350.18176801031613296No Hit
GAATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC352550.15317870691275887No Hit
GAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG343240.149133624622707No Hit
GAGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA327800.14242513154446848No Hit
GACAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG311020.13513442468871442No Hit
GACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC298500.1296946362599873No Hit
GAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA294180.12781764855934025No Hit
GATTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG267910.11640365159267403No Hit
GAGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGT265650.11542170895298368No Hit
GAGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG265600.11539998455830026No Hit
GACTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT257620.11193277116682723No Hit
GAGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGA253110.10997323076638321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)