FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22385924
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT465090.20776001919777803No Hit
GACTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA432960.1934072500201466No Hit
GACATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA307360.13730056440824154No Hit
GACAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG299660.13386090294954991No Hit
GATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC296380.13239569651000332No Hit
GAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG278360.12434599527810422No Hit
GACCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGAGCA260930.11655985252161136No Hit
GACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC237720.106191730124698No Hit
GACACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA236620.10570034991631348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)