FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40071750
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGAAGTTCCTTTTATGCATTGGAGGAAAAACATGTTGGCTTTTCTCTT516640.12892873408323818No Hit
ATTGTTATTCAACTCCTTCCAGTTGTCTTGAACAGCCTGACTCCTGCCAG514140.12830485316962698No Hit
ATCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT477690.11920866944917553No Hit
ATGTTCCTTTTATGCATTGGAGGAAAAACATGTTGGCTTTTCTCTTGACG441580.11019733353297523No Hit
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA433550.10819342803845602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)