FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45397654
Sequences flagged as poor quality0
Sequence length101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA697040.15354097372520614No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCAC677780.14929846374880956No Hit
ATCATTTCCACGAGCACCAGCAGGGCCAGGGGCTCCAGGGCGACCTCTCT576040.12688761406040938No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC513200.11304548909069179No Hit
CTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCG508080.11191767750818138No Hit
CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGT477480.10517724109708401No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC454680.10015495514371733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)