FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51199177
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA3950030.7715026356771321No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC3883690.7585453961496295No Hit
ATCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA2277530.4448372285359196No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG2265890.4425637544916005No Hit
ATCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG2263310.442059840141571No Hit
ATCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT1872010.3656328303870978No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC1865920.36444335814226075No Hit
ATCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC1744830.34079258734959744No Hit
ATGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA1578460.3082979243982769No Hit
ATTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG1236400.24148825673506433No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG1226760.2396054139698378No Hit
ATTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1176890.22986502302566308No Hit
ATCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTT1120490.2188492209552509No Hit
ATGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG1035750.20229817366009614No Hit
ATGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA1033510.2018606666275124No Hit
ATGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGG1013450.1979426348982133No Hit
ATATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAG981260.19165542446121742No Hit
ATGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGA827980.16171744323155818No Hit
ATCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGAGCA705440.1377834647615527No Hit
ATCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTT675390.13191422979318593No Hit
ATTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAAC650520.12705672983766908No Hit
ATCGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC594670.11614835136900736No Hit
ATCACCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGA592050.115636624393396No Hit
ATAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAG587820.11481043923811511No Hit
ATCTACAATATAGCTGCTAAGTGCTGTGTTGTCGTTCCCCCTGCTTAAAA584280.11411902187412114No Hit
ATAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTG544440.10633764679459592No Hit
ATGTCCAAGTGGCATAGGGGAGCTTAGGGCTCTGCCCCATGATGTACAGT543550.1061638158753997No Hit
ATCCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGC525270.10259344598449306No Hit
ATGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC513880.10036880085006053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)